Systems and methods for analyzing microbiological substances

ABSTRACT

Disclosed are systems and methods for monitoring a fluid for the purpose of identifying microbiological content and/or microorganisms and determining the effectiveness of a microbiological treatment. One method of monitoring a fluid includes containing the fluid within a flow path, the fluid including at least one microorganism present therein, optically interacting electromagnetic radiation from the fluid with at least one integrated computational element, thereby generating optically interacted light, receiving with at least one detector the optically interacted light, and generating with the at least one detector an output signal corresponding to a characteristic of the fluid, the characteristic of the fluid being a concentration of the at least one microorganism within the fluid.

CROSS-REFERENCE TO RELATED APPLICATIONS

The present application claims priority to and is a continuation-in-part application of co-owned U.S. patent application Ser. Nos. 13/198,915; 13/198,950; 13/198,972; 13/204,005; 13/204,046; 13/204,123; 13/204,165; 13/204,213; and 13/204,294, each of which were filed on Aug. 5, 2011. The contents of each priority application are hereby incorporated by reference.

BACKGROUND

The present invention relates to methods for monitoring a fluid in or near real-time and, more specifically, to methods for monitoring a fluid for the purpose of identifying microbiological content and/or microorganisms therein and determining the effectiveness of a microbiological treatment.

The presence of bacteria and other microorganisms in a substance is often determined after enhancing low levels of biological material to detectable levels. In some cases, a sample of the substance can be cultured under conditions that are conducive for growth of a particular biological material. In other cases, nucleic acid amplification techniques, such as polymerase chain reaction (PCR), can be used to increase levels of nucleic acids. Culturing methods, in particular, may sometimes be non-specific, as many different types of microorganisms may grow under the chosen culturing conditions, whereas only certain microorganisms may be of interest for an analysis. Furthermore, both culturing and nucleic acid amplification techniques are often constrained by the timeframe over which they are conducted. PCR techniques, for example, may take several hours or more to produce sufficient nucleic acid quantities for analysis, and culturing may take days to weeks to complete. Methods for real-time or near real-time monitoring of bacteria and other microorganisms are believed to not yet have been developed.

The present inability to monitor bacteria and other microorganisms in a sufficiently rapid manner can have significant ramifications for a variety of commercial and industrial products and processes. For example, due to a limited shelf life, a product (e.g., a foodstuff or pharmaceutical) may have been transported to a store and released for public consumption before product quality testing has been fully completed. By the time a biological contamination has been uncovered, it can oftentimes be too late, as consumers may have already been exposed to the contaminated product. Not only can human health be compromised, but valuable process time, raw materials, and other resources may have been lost by preparing and distributing a contaminated product.

Although biological contamination is a recognizable concern in the food and drug industry, the problem of contamination by bacteria and other microorganisms extends to a much broader array of fields, including those not directly impacting human health. For example, and without limitation, biological monitoring of water treatment and wastewater processing streams, including those from refineries, can be of significant interest due to downstream contamination issues. In subterranean oil and gas operations, biological contamination can reduce production and/or result in biofouling of equipment and wellbore surfaces. In addition, biological contamination on some solid surfaces can lead to structural defects, including corrosion, that ultimately may result in mechanical failure. In short, any industry in which monitoring of biological contamination or concentration is of interest could potentially benefit from more rapid detection techniques for biological materials.

While monitoring for the presence of biological materials, there is often also an interest in reducing or otherwise preventing biological contamination within a substance, such as a fluid. In some instances, a biocide may be used to slow or stop biological growth. Although biocides may often be effective for addressing the particular biological contamination, their effects can sometimes be slow acting. In addition, at least some members of a population of microorganisms are able to survive various biocide treatments.

SUMMARY OF THE INVENTION

The present invention relates to methods for monitoring a fluid in or near real-time and, more specifically, to methods for monitoring a fluid for the purpose of identifying microbiological content and/or microorganisms therein and to determine the effectiveness of a microbiological treatment.

In at least one aspect of the disclosure, a system is disclosed and includes a flow path containing a fluid having at least one microorganism present therein, at least one integrated computational element configured to optically interact with the fluid and thereby generate optically interacted light, and at least one detector arranged to receive the optically interacted light and generate an output signal corresponding to a characteristic of the fluid, the characteristic of the fluid being indicative of a concentration of the at least one microorganism within the fluid.

In other aspects of the disclosure, a method of monitoring a fluid is disclosed. The method may include containing the fluid within a flow path, the fluid including at least one microorganism present therein, optically interacting electromagnetic radiation from the fluid with at least one integrated computational element, thereby generating optically interacted light, receiving with at least one detector the optically interacted light, and generating with the at least one detector an output signal corresponding to a characteristic of the fluid, the characteristic of the fluid being a concentration of the at least one microorganism within the fluid.

In yet other aspects of the disclosure, a quality control method for a fluid is disclosed. The method may include optically interacting an electromagnetic radiation source with a fluid contained within a flow path and at least one integrated computational element, thereby generating optically interacted light, the fluid having at least one microorganism present therein, receiving with at least one detector the optically interacted light, measuring a characteristic of the fluid with the at least one detector, the characteristic of the fluid being a concentration of the at least one microorganism present therein, generating an output signal corresponding to the characteristic of the fluid, and undertaking at least one corrective step when the characteristic of the fluid surpasses a predetermined range of suitable operation.

The features and advantages of the present invention will be readily apparent to one having ordinary skill in the art upon a reading of the description of the preferred embodiments that follows.

BRIEF DESCRIPTION OF THE DRAWINGS

The following figure is included to illustrate certain aspects of the present invention, and should not be viewed as an exclusive embodiment. The subject matter disclosed is capable of considerable modification, alteration, and equivalents in form and function, as will occur to one having ordinary skill in the art and the benefit of this disclosure.

FIG. 1 illustrates an exemplary integrated computation element, according to one or more embodiments.

FIG. 2 illustrates a block diagram non-mechanistically illustrating how an optical computing device distinguishes electromagnetic radiation related to a characteristic of interest from other electromagnetic radiation, according to one or more embodiments.

FIG. 3 illustrates an exemplary system for monitoring a fluid, according to one or more embodiments.

FIG. 4 illustrates another exemplary system for monitoring a fluid, according to one or more embodiments.

DETAILED DESCRIPTION

The present invention relates to methods for monitoring a fluid in or near real-time and, more specifically, to methods for monitoring a fluid for the purpose of identifying microbiological content and/or microorganisms therein and to determine the effectiveness of a microbiological treatment.

The exemplary systems and methods described herein employ various configurations of optical computing devices, also commonly referred to as “opticoanalytical devices,” for the real-time or near real-time quantification of specific microbiological species and strains that live in fuel, hydrocarbons, and/or water contained in a flow path. As discussed above, conventional methods for monitoring and addressing biological contamination may be limited both by their effectiveness and timeliness of producing results. The optical computing devices described herein, however, can advantageously provide real-time or near real-time fluid monitoring that cannot presently be achieved with either onsite analyses at a job site or via more detailed analyses that take place in a laboratory. A significant and distinct advantage of these devices is that they can be configured to specifically detect and/or measure a particular component or characteristic of interest of a fluid, such as a set of pre-chosen microbiological species within the fluid, thereby allowing qualitative and/or quantitative analyses of the fluid to occur without having to extract a sample and undertake time-consuming analyses of the sample at an off-site laboratory.

With the ability to undertake real-time or near real-time analyses, the exemplary systems and methods described herein may be able to provide some measure of proactive or responsive control over a fluid within a flow path, enable the collection and archival of fluid information in conjunction with operational information to optimize subsequent operations, and/or enhance the capacity for remote job execution. As will become apparent to those skilled in the art, the disclosed systems and methods may be advantageous in the quantification of bacteria, microorganisms, and other microbiological species within a flow path, determining the need for an anti-microbiological treatment within the flow path, determining the effectiveness of the anti-microbiological treatment, and determining the concentration of sulfate reducing or acid producing bacteria within the flow path. By determining the foregoing parameters, flow paths can be treated in an increasingly tailored fashion, thereby allowing for reduced anti-microbiological chemical costs which can save significant sums of capital costs.

Those skilled in the art will readily appreciate that the systems and methods disclosed herein may be suitable for use in the oil and gas industry since the described optical computing devices provide a cost-effective, rugged, and accurate means for monitoring hydrocarbon, fuel, and/or water quality in order to facilitate the efficient management of oil/gas production. It will be further appreciated, however, that the various disclosed systems and methods are equally applicable to other technologies or industrial fields including, but not limited to, the food, medical, and drug industries, industrial applications, pollution mitigation, recycling industries, mining industries, security and military industries, forensics, processing industries, fish and livestock industries, agricultural industries, veterinarian sciences, epidemiology and other microbiological studies, or any field where it may be advantageous to determine in real-time or near real-time the concentration or a characteristic of a specific microbiological specie or strain in a flowing fluid. In some applications, the disclosed systems and methods may be useful in monitoring bio-decontamination applications, such as hydrocarbon or metal digesting microorganisms.

In at least one embodiment, for example, the present systems and methods may be employed in water analyses, including drinking water, waste water, and processing water analyses; bodily fluids, foodstuff, beverage, pharmaceutical, and cosmetic analyses; surface analyses; oil, gas, treatment fluid, drilling mud, and subterranean fluid analyses; and the like. In addition, the present systems and methods may be used in the healthcare industry to assay for biological contamination on surfaces such as, for example, medical devices, surgical instruments, and the like. Other industries where it may be desirable to monitor for biological contamination on a surface may be envisioned by one having ordinary skill in the art. The systems and methods described herein may be used in any field where it is desirable to assay for microorganisms and/or determine the effectiveness of a remediation operation used to control microorganisms. Given the benefit of the present disclosure, one having ordinary skill in the art will be able to apply the techniques described herein to any application in which it is desirable to control and measure microorganisms or other microbiological substances in a fluid.

The optical computing devices suitable for use in the present embodiments can be deployed at any number of various points within a flow path to monitor the fluid and the various changes that may occur thereto between two or more points. Depending on the location of the particular optical computing device, various types of information about the fluid can be obtained. In some cases, for example, the optical computing devices can be used to monitor changes to the fluid as a result of adding an anti-bacterial or anti-microbiological treatment thereto, removing an anti-bacterial treatment therefrom, or exposing the fluid to a condition that potentially changes a characteristic of the fluid in some way. In other cases, product quality of the fluid may be obtained by identifying and quantifying the concentration of known microbiological species that may be present in the fluid. In yet other embodiments, the optical computing devices can be used to detect and quantify a more general common substance for a set of microbiological species, such as biofilm, for a more general indication of the product quality of the fluid.

As used herein, the term “fluid” refers to any substance that is capable of flowing, including particulate solids, liquids, gases, slurries, emulsions, powders, muds, glasses, combinations thereof, and the like. In some embodiments, the fluid can be an aqueous fluid, including liquid fuel, water, or the like. In some embodiments, the fluid can be a non-aqueous fluid, including organic compounds, more specifically, hydrocarbons, oil, a refined component of oil, petrochemical products, and the like. In some embodiments, the fluid can be a treatment fluid or a formation fluid as found in the oil and gas industry. Fluids can include various flowable mixtures of solids, liquids and/or gases. Illustrative gases that can be considered fluids according to the present embodiments include, for example, air, nitrogen, carbon dioxide, argon, helium, thiophene, methane, ethane, butane, and other hydrocarbon gases, combinations thereof and/or the like.

As used herein, the term “characteristic” refers to a chemical, mechanical, or physical property of a substance, such as a fluid or a microorganism present within the fluid. A characteristic of a substance may include a quantitative value of one or more chemical components therein. Such chemical components may be referred to herein as “analytes.” Illustrative characteristics of a substance that can be monitored with the optical computing devices disclosed herein can include, for example, chemical composition (e.g., identity and concentration in total or of individual components), impurity content, pH, viscosity, density, ionic strength, total dissolved solids, salt content, porosity, opacity, bacteria content, combinations thereof, and the like. Moreover, the phrase “characteristic of interest of/in a fluid” may be used herein to refer to the characteristic of a substance contained in or otherwise flowing with the fluid.

As used herein, the term “flow path” refers to a route through which a fluid is capable of being transported between two or more points. In some cases, the flow path need not be continuous or otherwise contiguous between the two points. Exemplary flow paths include, but are not limited to, a flowline, a pipeline, a hose, a process facility, a storage vessel, a tanker, a railway tank car, a transport ship or vessel, a trough, a stream, a sewer, a subterranean formation, etc., combinations thereof, or the like. In cases where the flow path is a pipeline, or the like, the pipeline may be a pre-commissioned pipeline or an operational pipeline. In other cases, the flow path may be created or generated via movement of an optical computing device through a fluid (e.g., an open air sensor). In yet other cases, the flow path is not necessarily contained within any rigid structure, but may refer to the path fluid takes between two points, such as where a fluid flows from one location to another without being contained, per se. It should be noted that the term “flow path” does not necessarily imply that a fluid is flowing therein, rather that a fluid is capable of being transported or otherwise flowable therethrough.

As used herein, the term “microorganism” refers to a unicellular or multi-cellular microscopic or macroscopic life form. Microorganisms may include, but are not limited to, bacteria, protobacteria, protozoa, phytoplankton, viruses, fungi, algae, oomycetes, parasites, nematodes, and any combination thereof. Particular classes of bacteria that may be of interest include, for example, gram-positive and gram-negative bacteria, aerobic and anaerobic bacteria, sulfate-reducing bacteria, nitrate-reducing bacteria, or any combination thereof. In some embodiments, bacteria of genera such as, for example, Y-proteobacteria, α-proteobacteria, δ-proteobacteria, Clostridia, Methanohalophilus, Methanoplanus, Methanolobus, Methanocalculus, Methanosarcinaceae, Halanaerobium, Desulfobacter, Marinobacter, Halothiobacillus, and Fusibacter may be detected and analyzed by the techniques described herein. In more specific embodiments, bacteria of interest in the oilfield industry that may be detected and analyzed using the systems and methods described herein include, for example, Desulfovibrio desulfuricans, Desulfovibrio vulgaris, Desulfosarcina variabilis, Desulfobacter hydrogenophilus, Bdellovibrio bacteriovorus, Myxococcus xanthus, Bacillus subtilis, Methanococcus vannielii, P. aeruginosa, Micrococcus luteus, Desulfovibrio vulgaris, and Clostridium butyricum. Other bacterial that may be monitored or analyzed may include E. coli and other food/water contaminants, and pathogenic bacteria, such as Streptococcus, Pseudomonas, Shigella, Campylobacter, Salmonella, Staphylococcus, Pseudomonas aeruginosa, Burkholderia cenocepacia, and Mycobacterium avium. It is to be recognized that some microorganisms may be large enough to be seen with the naked eye.

The term “microorganism” may also refer to any microbiological species, strains, or substance known to those skilled in the art. For example, in some cases, the term microorganism may refer to a microbiological substance secreted or otherwise produced by a microorganism. Microbiological substances that may be considered microorganisms include, but are not limited to, plasma, cells, prions, proteins, lipids, any derivative thereof, and the like. The terms “microbiological treatment” and “anti-microbiological treatment” are used herein interchangeably and refer to treatments that either reduce or cultivate a population of microorganisms or microbiological substances.

As used herein, the term “viable microorganism” refers to a microorganism that is substantially unaltered from its native state and is capable of normal metabolic activity, including reproduction.

As used herein, the term “non-viable microorganism” refers to a microorganism that is no longer metabolically active. In some embodiments, non-viable microorganisms may refer to microorganisms that have had their cell wall ruptured, degraded, or modified by exposure to a degradative agent, such as an anti-bacterial treatment.

As used herein, the term “inactivated microorganism” refers to a microorganism that has been altered from its native state and is no longer capable of reproducing. The alteration that generates inactivated microorganisms may be temporary or permanent. Permanent alterations may include nucleic acid mutations, for example. Temporary alterations may include, for example, environmental conditions (e.g., temperature or lack of an appropriate nutrient source) that impact the microorganism's ability to reproduce or otherwise perform normal metabolic functions, but from which the microorganism may recover once returned to more favorable conditions.

As used herein, the term “electromagnetic radiation” refers to radio waves, microwave radiation, infrared and near-infrared radiation, visible light, ultraviolet light, X-ray radiation and gamma ray radiation.

As used herein, the terms “real-time” and “near real-time” refer to an analysis of a substance that takes place in substantially the same time frame as the interrogation of the substance with electromagnetic radiation.

As used herein, the term “optical computing device” refers to an optical device that is configured to receive an input of electromagnetic radiation from a fluid, or a microorganism present within the fluid, and produce an output of electromagnetic radiation from a processing element arranged within the optical computing device. The processing element may be, for example, an integrated computational element (ICE) used in the optical computing device. As discussed in greater detail below, the electromagnetic radiation that optically interacts with the processing element is changed so as to be readable by a detector, such that an output of the detector can be correlated to at least one microorganism measured or monitored within the fluid. The output of electromagnetic radiation from the processing element can be reflected electromagnetic radiation, transmitted electromagnetic radiation, and/or dispersed electromagnetic radiation. The structural parameters of the optical computing device, as well as other considerations known to those skilled in the art, may dictate whether reflected, transmitted, or dispersed electromagnetic radiation is eventually analyzed by the detector. In addition, emission and/or scattering of the substance, for example via fluorescence, luminescence, Raman scattering, and/or Raleigh scattering, can also be monitored by the optical computing devices.

As used herein, the term “optically interact” or variations thereof refers to the reflection, transmission, scattering, diffraction, or absorption of electromagnetic radiation either on, through, or from one or more processing elements (i.e., integrated computational elements). Accordingly, optically interacted light refers to light that has been reflected, transmitted, scattered, diffracted, or absorbed by, emitted, or re-radiated, for example, using the integrated computational elements, but may also apply to interaction with a fluid or a microorganism within the fluid.

As disclosed in commonly owned U.S. patent application Ser. No. 13/204,294, filed on Aug. 5, 2011 and incorporated herein by reference in its entirety, one or more integrated computational elements may be used to rapidly detect and analyze particular types of bacteria, including whether the bacteria are living or dead. Those techniques may be extended to other types of microorganisms, as discussed hereinafter. Microorganism analyses may be conducted using one or more integrated computational elements much more rapidly than with conventional biological assays. The rapidity by which integrated computational elements may perform analyses is advantageous for a number of applications, and it is particularly advantageous for analyses of biological materials, including microorganisms.

Specifically, the integrated computational elements may be used to assess the degree to which microorganisms, classes of microorganisms, or other microbiological substances have been rendered non-viable by a microbiological treatment (e.g., anti-microbiological treatment) which may kill or otherwise render non-viable microorganisms. Differentiation between viable microorganisms and non-viable microorganisms may be determined readily using one or more integrated computational elements, as described herein. Moreover, due to the rapidity at which integrated computational elements may provide information about a population of microorganisms, they may be used advantageously for conducting real-time or near real-time biological analyses, thereby satisfying an unmet need in the art. Furthermore, they may be used to follow and proactively manage the progress of a biological remediation operation (e.g., a microbiological treatment) in real-time or near-real time, thereby improving its effectiveness. For example, if an analysis indicates that unacceptably high levels of viable microorganisms remain in a fluid during or following a biological remediation operation, the operational parameters associated with the remediation may be altered in an attempt to increase the treatment effectiveness. Conventional microorganism assay techniques, in contrast, are simply too slow to allow proactive management of biological remediation operations to take place.

The exemplary systems and methods described herein include at least one optical computing device arranged along or within a flow path in order to monitor a fluid flowing or otherwise contained therein. Each optical computing device may include an electromagnetic radiation source, at least one processing element (e.g., integrated computational elements), and at least one detector arranged to receive optically interacted light from the at least one processing element. As disclosed below, however, in at least one embodiment, the electromagnetic radiation source may be omitted and instead the electromagnetic radiation may be derived from the fluid or microorganism itself. In some embodiments, the exemplary optical computing devices may be specifically configured for detecting, analyzing, and quantitatively measuring a particular characteristic or analyte of interest of the fluid in the flow path. In other embodiments, the optical computing devices may be general purpose optical devices, with post-acquisition processing (e.g., through computer means) being used to specifically detect the characteristic of the sample.

In some embodiments, suitable structural components for the exemplary optical computing devices are described in commonly owned U.S. Pat. Nos. 6,198,531; 6,529,276; 7,123,844; 7,834,999; 7,911,605, 7,920,258, and 8,049,881, each of which is incorporated herein by reference in its entirety, and U.S. patent application Ser. Nos. 12/094,460; 12/094,465; and 13/456,467, each of which is also incorporated herein by reference in its entirety. As will be appreciated, variations of the structural components of the optical computing devices described in the above-referenced patents and patent applications may be suitable, without departing from the scope of the disclosure, and therefore, should not be considered limiting to the various embodiments or uses disclosed herein.

The optical computing devices described in the foregoing patents and patent applications combine the advantage of the power, precision and accuracy associated with laboratory spectrometers, while being extremely rugged and suitable for field use. Furthermore, the optical computing devices can perform calculations (analyses) in real-time or near real-time without the need for time-consuming sample processing. In this regard, the optical computing devices can be specifically configured to detect and analyze particular characteristics, microorganisms, and/or analytes of interest of a fluid. As a result, interfering signals are discriminated from those of interest in the fluid by appropriate configuration of the optical computing devices, such that the optical computing devices provide a rapid response regarding the characteristics of the fluid as based on the detected output. In some embodiments, the detected output can be converted into a voltage that is distinctive of the magnitude of the characteristic or microorganism being monitored in the fluid. The foregoing advantages and others make the optical computing devices particularly well suited for field and downhole use, but may equally be applied to several other technologies or industries, without departing from the scope of the disclosure.

The optical computing devices can be configured to detect not only the composition and concentrations of a microorganism in a fluid, but they also can be configured to determine physical properties and other characteristics of the microorganism as well, based on their analysis of the electromagnetic radiation received from the particular microorganism. For example, the optical computing devices can be configured to determine whether the detected microorganism is viable, non-viable, or inactivated. As will be appreciated, the optical computing devices may be configured to detect as many microorganisms or as many characteristics or analytes of the microorganism as desired in the fluid. All that is required to accomplish the monitoring of multiple characteristics and/or microorganisms is the incorporation of suitable processing and detection means within the optical computing device for each microorganism and/or characteristic. In some embodiments, the properties of the characteristic can be a combination of the properties of the analytes therein (e.g., a linear, non-linear, logarithmic, and/or exponential combination). Accordingly, the more analytes that are detected and analyzed using the optical computing devices, the more accurately the properties of the given characteristic will be determined.

The optical computing devices described herein utilize electromagnetic radiation to perform calculations, as opposed to the hardwired circuits of conventional electronic processors. When electromagnetic radiation interacts with a fluid, or a microorganism present therein, unique physical and chemical information about the fluid or microorganism may be encoded in the electromagnetic radiation that is reflected from, transmitted through, or radiated from the substance. This information is often referred to as the spectral “fingerprint” of the fluid or microorganism. The optical computing devices described herein are capable of extracting the information of the spectral fingerprint of multiple characteristics or analytes within a fluid, and converting that information into a detectable output regarding the overall properties of the fluid, including the concentration and contents of microorganisms. That is, through suitable configurations of the optical computing devices, electromagnetic radiation associated with a characteristic or analyte of interest of a fluid or a microorganism present therein can be separated from electromagnetic radiation associated with all other components of the fluid in order to estimate the properties of the microorganism in real-time or near real-time.

The processing elements used in the exemplary optical computing devices described herein may be characterized as integrated computational elements (ICE). Each ICE is capable of distinguishing electromagnetic radiation related to the characteristic or microorganism of interest from electromagnetic radiation related to other components of a fluid. Referring to FIG. 1, illustrated is an exemplary ICE 100 suitable for use in the optical computing devices used in the systems and methods described herein. As illustrated, the ICE 100 may include a plurality of alternating layers 102 and 104, such as silicon (Si) and SiO₂ (quartz), respectively. In general, these layers 102, 104 consist of materials whose index of refraction is high and low, respectively. Other examples might include niobia and niobium, germanium and germania, MgF, SiO, and other high and low index materials known in the art. The layers 102, 104 may be strategically deposited on an optical substrate 106. In some embodiments, the optical substrate 106 is BK-7 optical glass. In other embodiments, the optical substrate 106 may be another type of optical substrate, such as quartz, sapphire, silicon, germanium, zinc selenide, zinc sulfide, or various plastics such as polycarbonate, polymethylmethacrylate (PMMA), polyvinylchloride (PVC), diamond, ceramics, combinations thereof, and the like.

At the opposite end (e.g., opposite the optical substrate 106 in FIG. 1), the ICE 100 may include a layer 108 that is generally exposed to the environment of the device or installation. The number of layers 102, 104 and the thickness of each layer 102, 104 are determined from the spectral attributes acquired from a spectroscopic analysis of a specific characteristic of interest using a conventional spectroscopic instrument. The spectrum of interest for a given characteristic typically includes any number of different wavelengths. It should be understood that the exemplary ICE 100 in FIG. 1 does not in fact represent any particular characteristic of interest, but is provided for purposes of illustration only. Consequently, the number of layers 102, 104 and their relative thicknesses, as shown in FIG. 1, bear no correlation to any particular characteristic of interest. Nor are the layers 102, 104 and their relative thicknesses necessarily drawn to scale, and therefore should not be considered limiting of the present disclosure. Moreover, those skilled in the art will readily recognize that the materials that make up each layer 102, 104 (i.e., Si and SiO₂) may vary, depending on the application, cost of materials, and/or applicability of the material to the given characteristic.

In some embodiments, the material of each layer 102, 104 can be doped or two or more materials can be combined in a manner to achieve the desired optical characteristic. In addition to solids, the exemplary ICE 100 may also contain liquids and/or gases, optionally in combination with solids, in order to produce a desired optical characteristic. In the case of gases and liquids, the ICE 100 can contain a corresponding vessel (not shown), which houses the gases or liquids. Exemplary variations of the ICE 100 may also include holographic optical elements, gratings, piezoelectric, light pipe, digital light pipe (DLP), and/or acousto-optic elements, for example, that can create transmission, reflection, and/or absorptive properties of interest.

The multiple layers 102, 104 exhibit different refractive indices. By properly selecting the materials of the layers 102, 104 and their relative thickness and spacing, the ICE 100 may be configured to selectively pass/reflect/refract predetermined fractions of electromagnetic radiation at different wavelengths. Each wavelength is given a predetermined weighting or loading factor. The thickness and spacing of the layers 102, 104 may be determined using a variety of approximation methods from the spectrograph of the characteristic or analyte of interest. These methods may include inverse Fourier transform (IFT) of the optical transmission spectrum and structuring the ICE 100 as the physical representation of the IFT. The approximations convert the IFT into a structure based on known materials with constant refractive indices. Further information regarding the structures and design of exemplary integrated computational elements (also referred to as multivariate optical elements) is provided in Applied Optics, Vol. 35, pp. 5484-5492 (1996) and Vol. 129, pp. 2876-2893, which is hereby incorporated by reference.

The weightings that the layers 102, 104 of the ICE 100 apply at each wavelength are set to the regression weightings described with respect to a known equation, or data, or spectral signature. Briefly, the ICE 100 may be configured to perform the dot product of the input light beam into the ICE 100 and a desired loaded regression vector represented by each layer 102, 104 for each wavelength. As a result, the output light intensity of the ICE 100 is related to the characteristic or analyte of interest. Further details regarding how the exemplary ICE 100 is able to distinguish and process electromagnetic radiation related to the characteristic or analyte of interest are described in U.S. Pat. Nos. 6,198,531; 6,529,276; and 7,920,258, previously incorporated herein by reference.

Referring now to FIG. 2, illustrated is a block diagram that non-mechanistically illustrates how an optical computing device 200 is able to distinguish electromagnetic radiation related to a characteristic of a fluid or a microorganism present therein from other electromagnetic radiation. As shown in FIG. 2, after being illuminated with incident electromagnetic radiation, a fluid 202 containing a microorganism (e.g., a characteristic of interest) produces an output of electromagnetic radiation (e.g., sample-interacted light), some of which is electromagnetic radiation 204 corresponding to the microorganism and some of which is background electromagnetic radiation 206 corresponding to other components or characteristics of the fluid 202.

Although not specifically shown, one or more spectral elements may be employed in the device 200 in order to restrict the optical wavelengths and/or bandwidths of the system and thereby eliminate unwanted electromagnetic radiation existing in wavelength regions that have no importance. Such spectral elements can be located anywhere along the optical train, but are typically employed directly after the light source, which provides the initial electromagnetic radiation. Various configurations and applications of spectral elements in optical computing devices may be found in commonly owned U.S. Pat. Nos. 6,198,531; 6,529,276; 7,123,844; 7,834,999; 7,911,605, 7,920,258, 8,049,881, and U.S. patent application Ser. No. 12/094,460 (U.S. Pat. App. Pub. No. 2009/0219538); Ser. No. 12/094,465 (U.S. Pat. App. Pub. No. 2009/0219539); and Ser. No. 13/456,467, incorporated herein by reference, as indicated above.

The beams of electromagnetic radiation 204, 206 impinge upon the optical computing device 200, which contains an exemplary ICE 208 therein. In the illustrated embodiment, the ICE 208 may be configured to produce optically interacted light, for example, transmitted optically interacted light 210 and reflected optically interacted light 214. In operation, the ICE 208 may be configured to distinguish the electromagnetic radiation 204 from the background electromagnetic radiation 206.

The transmitted optically interacted light 210, which may be related to the microorganism or another characteristic of interest in the fluid 202, may be conveyed to a detector 212 for analysis and quantification. In some embodiments, the detector 212 is configured to produce an output signal in the form of a voltage that corresponds to the particular characteristic being monitored in the fluid 202. In at least one embodiment, the signal produced by the detector 212 and the concentration of the characteristic of the fluid 202 may be directly proportional. In other embodiments, the relationship may be a polynomial function, an exponential function, and/or a logarithmic function. The reflected optically interacted light 214, which may be related to characteristics of other components of the fluid 202, can be directed away from detector 212. In alternative configurations, the ICE 208 may be configured such that the reflected optically interacted light 214 can be related to the characteristic of interest (e.g., concentration of a microorganism), and the transmitted optically interacted light 210 can be related to other components or characteristics of the fluid 202.

In some embodiments, a second detector 216 can be present and arranged to detect the reflected optically interacted light 214. In other embodiments, the second detector 216 may be arranged to detect the electromagnetic radiation 204, 206 derived from the fluid 202 or electromagnetic radiation directed toward or before the fluid 202. Without limitation, the second detector 216 may be used to detect radiating deviations stemming from an electromagnetic radiation source (not shown), which provides the electromagnetic radiation (i.e., light) to the device 200. For example, radiating deviations can include such things as, but not limited to, intensity fluctuations in the electromagnetic radiation, interferent fluctuations (e.g., dust or other interferents passing in front of the electromagnetic radiation source), coatings on windows included with the optical computing device 200, combinations thereof, or the like. In some embodiments, a beam splitter (not shown) can be employed to split the electromagnetic radiation 204, 206, and the transmitted or reflected electromagnetic radiation can then be directed to one or more ICE 208. That is, in such embodiments, the ICE 208 does not function as a type of beam splitter, as depicted in FIG. 2, and the transmitted or reflected electromagnetic radiation simply passes through the ICE 208, being computationally processed therein, before travelling to the detector 212.

The characteristic(s) of the fluid 202 being analyzed using the optical computing device 200 can be further processed computationally to provide additional characterization information about the fluid 202. In some embodiments, the identification and concentration of each analyte or microorganism in the fluid 202 can be used to predict certain physical characteristics of the fluid 202. For example, the bulk characteristics of a fluid 202 can be estimated by using a combination of the properties conferred to the fluid 202 by each analyte or microorganism.

In some embodiments, the concentration of each microorganism or the magnitude of each characteristic determined using the optical computing device 200 can be fed into an algorithm operating under computer control. The algorithm may be configured to make predictions on how the characteristics of the fluid 202 change if the concentrations of the microorganisms or analytes are changed relative to one another. In some embodiments, the algorithm can produce an output that is readable by an operator who can manually take appropriate action, if needed, based upon the output. In some embodiments, the algorithm can take proactive process control by automatically adjusting the flow of a treatment substance (e.g., anti-bacterial or microbiological treatment) being introduced into a flow path or by halting the introduction of the treatment substance in response to an out of range condition.

The algorithm can be part of an artificial neural network configured to use the concentration of each detected characteristic or microorganism in order to evaluate the overall characteristic(s) of the fluid 202 and predict how to modify the fluid 202 in order to alter its properties in a desired way. Illustrative but non-limiting artificial neural networks are described in commonly owned U.S. patent application Ser. No. 11/986,763 (U.S. Patent App. Pub. No. 2009/0182693), which is incorporated herein by reference. It is to be recognized that an artificial neural network can be trained using samples of characteristics or microorganisms having known concentrations, compositions, and/or properties, and thereby generating a virtual library. As the virtual library available to the artificial neural network becomes larger, the neural network can become more capable of accurately predicting the characteristics of a fluid having any number of microorganisms or analytes present therein. Furthermore, with sufficient training, the artificial neural network can more accurately predict the characteristics of the fluid, even in the presence of unknown microorganisms.

It is recognized that the various embodiments herein directed to computer control and artificial neural networks, including various blocks, modules, elements, components, methods, and algorithms, can be implemented using computer hardware, software, combinations thereof, and the like. To illustrate this interchangeability of hardware and software, various illustrative blocks, modules, elements, components, methods and algorithms have been described generally in terms of their functionality. Whether such functionality is implemented as hardware or software will depend upon the particular application and any imposed design constraints. For at least this reason, it is to be recognized that one of ordinary skill in the art can implement the described functionality in a variety of ways for a particular application. Further, various components and blocks can be arranged in a different order or partitioned differently, for example, without departing from the scope of the embodiments expressly described.

Computer hardware used to implement the various illustrative blocks, modules, elements, components, methods, and algorithms described herein can include a processor configured to execute one or more sequences of instructions, programming stances, or code stored on a non-transitory, computer-readable medium. The processor can be, for example, a general purpose microprocessor, a microcontroller, a digital signal processor, an application specific integrated circuit, a field programmable gate array, a programmable logic device, a controller, a state machine, a gated logic, discrete hardware components, an artificial neural network, or any like suitable entity that can perform calculations or other manipulations of data. In some embodiments, computer hardware can further include elements such as, for example, a memory (e.g., random access memory (RAM), flash memory, read only memory (ROM), programmable read only memory (PROM), erasable read only memory (EPROM)), registers, hard disks, removable disks, CD-ROMS, DVDs, or any other like suitable storage device or medium.

Executable sequences described herein can be implemented with one or more sequences of code contained in a memory. In some embodiments, such code can be read into the memory from another machine-readable medium. Execution of the sequences of instructions contained in the memory can cause a processor to perform the process steps described herein. One or more processors in a multi-processing arrangement can also be employed to execute instruction sequences in the memory. In addition, hard-wired circuitry can be used in place of or in combination with software instructions to implement various embodiments described herein. Thus, the present embodiments are not limited to any specific combination of hardware and/or software.

As used herein, a machine-readable medium will refer to any medium that directly or indirectly provides instructions to a processor for execution. A machine-readable medium can take on many forms including, for example, non-volatile media, volatile media, and transmission media. Non-volatile media can include, for example, optical and magnetic disks. Volatile media can include, for example, dynamic memory. Transmission media can include, for example, coaxial cables, wire, fiber optics, and wires that form a bus. Common forms of machine-readable media can include, for example, floppy disks, flexible disks, hard disks, magnetic tapes, other like magnetic media, CD-ROMs, DVDs, other like optical media, punch cards, paper tapes and like physical media with patterned holes, RAM, ROM, PROM, EPROM and flash EPROM.

In some embodiments, the data collected using the optical computing devices can be archived along with data associated with operational parameters being logged at a job site. Evaluation of job performance can then be assessed and improved for future operations or such information can be used to design subsequent operations. In addition, the data and information can be communicated (wired or wirelessly) to a remote location by a communication system (e.g., satellite communication or wide area network communication) for further analysis. The communication system can also allow remote monitoring and operation of a process to take place. Automated control with a long-range communication system can further facilitate the performance of remote job operations. In particular, an artificial neural network can be used in some embodiments to facilitate the performance of remote job operations. That is, remote job operations can be conducted automatically in some embodiments. In other embodiments, however, remote job operations can occur under direct operator control, where the operator is not at the job site.

Referring now to FIG. 3, illustrated is an exemplary system 300 for monitoring a fluid 302 containing one or more microorganisms, according to one or more embodiments. In the illustrated embodiment, the fluid 302 may be contained or otherwise flowing within an exemplary flow path 304. The flow path 304 may be a flow line or a pipeline and the fluid 302 present therein may be flowing in the general direction indicated by the arrows A (i.e., from upstream to downstream). As will be appreciated, however, the flow path 304 may be any other type of flow path, as generally described or otherwise defined herein. For example, the flow path 304 may be a containment or storage vessel and the fluid 302 may not necessarily be flowing (i.e., moving) in the direction A while the fluid 302 is being monitored.

In at least one embodiment, however, the flow path 304 may form part of an oil/gas pipeline and may be part of a wellhead or a plurality of subsea and/or above-ground interconnecting flow lines or pipes that interconnect various subterranean hydrocarbon reservoirs with one or more receiving/gathering platforms or process facilities. In some embodiments, portions of the flow path 304 may be employed downhole and fluidly connect, for example, a formation and a wellhead. As such, portions of the flow path 304 may be arranged substantially vertical, substantially horizontal, or any directional configuration therebetween, without departing from the scope of the disclosure.

The system 300 may include at least one optical computing device 306, which may be similar in some respects to the optical computing device 200 of FIG. 2, and therefore may be best understood with reference thereto. While not shown, the optical computing device 306 may be housed within a casing or housing configured to substantially protect the internal components of the device 306 from damage or contamination from the external environment. The housing may operate to mechanically couple the device 306 to the flow path 304 with, for example, mechanical fasteners, brazing or welding techniques, adhesives, magnets, combinations thereof or the like. In operation, the housing may be designed to withstand the pressures that may be experienced within or without the flow path 304 and thereby provide a fluid tight seal against external contamination. As described in greater detail below, the optical computing device 306 may be useful in determining a particular characteristic of the fluid 302 within the flow path 304, such as determining a concentration of a microorganism (viable or non-viable) present within the fluid 302. Knowing the concentration of microorganisms may help determine the overall quality of the fluid 302 and provide an opportunity to remedy potentially undesirable levels of microorganisms in the fluid 302.

The device 306 may include an electromagnetic radiation source 308 configured to emit or otherwise generate electromagnetic radiation 310. The electromagnetic radiation source 308 may be any device capable of emitting or generating electromagnetic radiation, as defined herein. For example, the electromagnetic radiation source 308 may be a light bulb, a light emitting device (LED), a laser, a blackbody, a blackbody simulator, a photonic crystal, an X-Ray source, combinations thereof, or the like. In some embodiments, a lens 312 may be configured to collect or otherwise receive the electromagnetic radiation 310 and direct a beam 314 of electromagnetic radiation 310 toward the fluid 302. The lens 312 may be any type of optical device configured to transmit or otherwise convey the electromagnetic radiation 310 as desired. For example, the lens 312 may be a normal lens, a Fresnel lens, a diffractive optical element, a holographic graphical element, a mirror (e.g., a focusing mirror), a type of collimator, or any other electromagnetic radiation transmitting device known to those skilled in art. In other embodiments, the lens 312 may be omitted from the device 306 and the electromagnetic radiation 310 may instead be directed toward the fluid 302 directly from the electromagnetic radiation source 308.

In one or more embodiments, the device 306 may also include a sampling window 316 arranged adjacent to or otherwise in contact with the fluid 302 for detection purposes. The sampling window 316 may be made from a variety of transparent, rigid or semi-rigid materials that are configured to allow transmission of the electromagnetic radiation 310 therethrough. For example, the sampling window 316 may be made of, but is not limited to, glasses, plastics, semi-conductors, crystalline materials, polycrystalline materials, hot or cold-pressed powders, combinations thereof, or the like. In order to remove ghosting or other imaging issues resulting from reflectance on the sampling window 316, the system 300 may employ one or more internal reflectance elements (IRE), such as those described in co-owned U.S. Pat. No. 7,697,141, and/or one or more imaging systems, such as those described in co-owned U.S. patent application Ser. No. 13/456,467, the contents of each hereby being incorporated by reference.

After passing through the sampling window 316, the electromagnetic radiation 310 impinges upon and optically interacts with the fluid 302, including any microorganisms present within the fluid 302. As a result, optically interacted radiation 318 is generated by and reflected from the fluid 302. Those skilled in the art, however, will readily recognize that alternative variations of the device 306 may allow the optically interacted radiation 318 to be generated by being transmitted, scattered, diffracted, absorbed, emitted, or re-radiated by and/or from the fluid 302, or one or more microorganisms present within the fluid 302, without departing from the scope of the disclosure.

The optically interacted radiation 318 generated by the interaction with the fluid 302, and/or at least one microorganism present therein, may be directed to or otherwise be received by an ICE 320 arranged within the device 306. The ICE 320 may be a spectral component substantially similar to the ICE 100 described above with reference to FIG. 1. Accordingly, in operation the ICE 320 may be configured to receive the optically interacted radiation 318 and produce modified electromagnetic radiation 322 corresponding to a particular characteristic of interest in the fluid 302, including any microorganisms that may be present therein. In particular, the modified electromagnetic radiation 322 is electromagnetic radiation that has optically interacted with the ICE 320, whereby an approximate mimicking of the regression vector corresponding to the characteristic or microorganism in the fluid 302 is obtained.

It should be noted that, while FIG. 3 depicts the ICE 320 as receiving reflected electromagnetic radiation from the fluid 302, the ICE 320 may be arranged at any point along the optical train of the device 306, without departing from the scope of the disclosure. For example, in one or more embodiments, the ICE 320 (as shown in dashed) may be arranged within the optical train prior to the sampling window 316 and equally obtain substantially the same results. In other embodiments, the sampling window 316 may serve a dual purpose as both a transmission window and the ICE 320 (i.e., a spectral component). In yet other embodiments, the ICE 320 may optically interact with the fluid 302 or electromagnetic radiation 310 to generate the modified electromagnetic radiation 322 through reflection, instead of transmission therethrough.

Moreover, while only one ICE 320 is shown in the device 306, embodiments are contemplated herein which include the use of at least two ICE components in the device 306 configured to cooperatively determine the characteristic of interest in the fluid 302 or a microorganism present therein. For example, two or more ICE may be arranged in series or parallel within the device 306 and configured to receive the optically interacted radiation 318 and thereby enhance sensitivities and detector limits of the device 306. In other embodiments, two or more ICE may be arranged on a movable assembly, such as a rotating disc or an oscillating linear array, which moves such that the individual ICE components are able to be exposed to or otherwise optically interact with electromagnetic radiation for a distinct brief period of time. The two or more ICE components in any of these embodiments may be configured to be either associated or disassociated with the characteristic of interest in the fluid 302 or a microorganism present therein. In other embodiments, the two or more ICE may be configured to be positively or negatively correlated with the characteristic of interest in the fluid 302 or a microorganism present therein. These optional embodiments employing two or more ICE components are further described in co-pending U.S. patent application Ser. Nos. 13/456,264, 13/456,405, 13/456,302, and 13/456,327, the contents of which are hereby incorporated by reference in their entireties.

In some embodiments, it may be desirable to monitor more than one characteristic of interest or microorganism at a time using the device 306. In such embodiments, various configurations for multiple ICE components can be used, where each ICE component is configured to detect a particular and/or distinct characteristic or microorganism of interest. In some embodiments, the characteristic or microorganism can be analyzed sequentially using multiple ICE components that are provided a single beam of electromagnetic radiation being reflected from or transmitted through the fluid 302. In some embodiments, as briefly mentioned above, multiple ICE components can be arranged on a rotating disc, where the individual ICE components are only exposed to the beam of electromagnetic radiation for a short time. Advantages of this approach can include the ability to analyze multiple characteristics or microorganisms within the fluid 302 using a single optical computing device and the opportunity to assay additional microorganisms simply by adding additional ICE components to the rotating disc.

In other embodiments, multiple optical computing devices can be placed at a single location along the flow path 304, where each optical computing device contains a unique ICE that is configured to detect a particular characteristic of interest in the fluid 302 or a microorganism present therein. In such embodiments, a beam splitter can divert a portion of the electromagnetic radiation being reflected by, emitted from, or transmitted through the fluid 302 and into each optical computing device. Each optical computing device, in turn, can be coupled to a corresponding detector or detector array that is configured to detect and analyze an output of electromagnetic radiation from the respective optical computing device. Parallel configurations of optical computing devices can be particularly beneficial for applications that require low power inputs and/or no moving parts.

Those skilled in the art will appreciate that any of the foregoing configurations can further be used in combination with a series configuration in any of the present embodiments. For example, two optical computing devices having a rotating disc with a plurality of ICE components arranged thereon can be placed in series for performing an analysis at a single location along the length of the flow path 304. Likewise, multiple detection stations, each containing optical computing devices in parallel, can be placed in series for performing a similar analysis.

The modified electromagnetic radiation 322 generated by the ICE 320 may subsequently be conveyed to a detector 324 for quantification of the signal. The detector 324 may be any device capable of detecting electromagnetic radiation, and may be generally characterized as an optical transducer. In some embodiments, the detector 324 may be, but is not limited to, a thermal detector such as a thermopile or photoacoustic detector, a semiconductor detector, a piezoelectric detector, a charge coupled device (CCD) detector, a video or array detector, a split detector, a photon detector (such as a photomultiplier tube), photodiodes, combinations thereof, or the like, or other detectors known to those skilled in the art.

In some embodiments, the detector 324 may be configured to produce an output signal 326 in real-time or near real-time in the form of a voltage (or current) that corresponds to the particular characteristic of interest in the fluid 302 or a microorganism present therein. The voltage returned by the detector 324 is essentially the dot product of the optical interaction of the optically interacted radiation 318 with the respective ICE 320 as a function of the concentration of the characteristic or microorganism of interest of the fluid 302. As such, the output signal 326 produced by the detector 324 and the concentration of the characteristic of interest in the fluid 302 or a microorganism present therein may be related, for example, directly proportional. In other embodiments, however, the relationship may correspond to a polynomial function, an exponential function, a logarithmic function, and/or a combination thereof.

In some embodiments, the device 306 may include a second detector 328, which may be similar to the first detector 324 in that it may be any device capable of detecting electromagnetic radiation. Similar to the second detector 216 of FIG. 2, the second detector 328 of FIG. 3 may be used to detect radiating deviations stemming from the electromagnetic radiation source 308. Undesirable radiating deviations can occur in the intensity of the electromagnetic radiation 310 due to a wide variety of reasons and potentially causing various negative effects on the device 306. These negative effects can be particularly detrimental for measurements taken over a period of time. In some embodiments, radiating deviations can occur as a result of a build-up of film or material on the sampling window 316 which has the effect of reducing the amount and quality of light ultimately reaching the first detector 324. Without proper compensation, such radiating deviations could result in false readings and the output signal 326 would no longer be primarily or accurately related to the characteristic or microorganism of interest.

To compensate for these types of undesirable effects, the second detector 328 may be configured to generate a compensating signal 330 generally indicative of the radiating deviations of the electromagnetic radiation source 308, and thereby normalize the output signal 326 generated by the first detector 324. As illustrated, the second detector 328 may be configured to receive a portion of the optically interacted radiation 318 via a beamsplitter 332 in order to detect the radiating deviations. In other embodiments, however, the second detector 328 may be arranged to receive electromagnetic radiation from any portion of the optical train in the device 306 in order to detect the radiating deviations, without departing from the scope of the disclosure.

In some applications, the output signal 326 and the compensating signal 330 may be conveyed to or otherwise received by a signal processor 334 communicably coupled to both the detectors 320, 328. The signal processor 334 may be a computer including a non-transitory machine-readable medium, and may be configured to computationally combine the compensating signal 330 with the output signal 326 in order to normalize the output signal 326 in view of any radiating deviations detected by the second detector 328. In some embodiments, computationally combining the output and compensating signals 320, 328 may entail computing a ratio of the two signals 320, 328. For example, the concentration of each microorganism or the magnitude of each characteristic determined using the optical computing device 306 can be fed into an algorithm run by the signal processor 334. The algorithm may be configured to make predictions on how the characteristics of the fluid 302 change if the concentrations of the microorganisms are changed relative to one another.

In real-time or near real-time, the signal processor 334 may be configured to provide a resulting output signal 336 corresponding to a concentration of the characteristic of interest in the fluid 302 or a microorganism present therein. The resulting output signal 336 may be readable by an operator who can consider the results and make proper adjustments or take appropriate action, if needed, based upon the measured concentration of microorganisms in the fluid 302. In some embodiments, the resulting signal output 328 may be conveyed, either wired or wirelessly, to the user for consideration. In other embodiments, the resulting output signal 336 may be recognized by the signal processor 334 as being within or without a predetermined or preprogrammed range of suitable operation.

For example, the signal processor 334 may be programmed with an impurity profile corresponding to one or more microorganisms. The impurity profile may be a measurement of a concentration or percentage of microorganism within the fluid 302. In some embodiments, the impurity profile may be measured in the parts per million range, but in other embodiments, the impurity profile may be measured in the parts per thousand or billion range. If the resulting output signal 336 exceeds or otherwise falls without a predetermined or preprogrammed range of operation for the impurity profile, the signal processor 334 may be configured to alert the user of an excessive amount or percentage of microorganism(s) so appropriate corrective or remedial action may be taken. In other embodiments, the signal processor 334 may be configured to autonomously undertake the appropriate corrective/remedial action such that the resulting output signal 336 returns to a value falling within the predetermined or preprogrammed range of suitable operation. In some embodiments, the corrective action may include, but is not limited to, adding a treatment substance (i.e., a biocide, anti-bacterial, or microbiological treatment) to the flow path 302, increasing or decreasing the fluid flow within the flow path 302, shutting off the fluid flow within the flow path 302, combinations thereof, or the like.

Those skilled in the art will readily appreciate the various and numerous applications that the system 300, and alternative configurations thereof, may be suitably used with. For example, in one or more embodiments the fluid 302 may be a hydrocarbon corresponding to the oil and gas industry and conveyed through a flow path 304, such as a pipeline or a flowline. The optical computing device 306 may be advantageous in monitoring or otherwise quantifying the concentration of one or more microorganisms present within the fluid 302. As recognized by those skilled in the art, the most problematic microorganisms in hydrocarbon transport are those that attack the pipeline infrastructure by imparting a corrosive effect on the pipelines, such as sulfate reducing bacteria that create an extremely corrosive environment in pipelines. In some cases, the microorganisms within the fluid 302 might not adversely affect the current live fluid flow, but may have the potential to infect other flowline systems or vessels if proper remedial care is not undertaken. In such cases, the system 300 may be useful in preventing the onset of pipeline degradation in downstream portions of the flow path 304.

In operation, the optical computing device 306 may optically interact with the fluid 302 and/or the microorganisms present therein to provide real-time, accurate data with respect to the microbiologic status within the flow path 304, such that more specific corrective or remedial actions can be taken to prevent unnecessary pipeline damage or reservoir contamination. By knowing how infected the pipes or pipelines flowing inventory are with a particular microorganism, an anti-bacterial or microbiological treatment dosage may be administered that is tailored for the specific need. For instance, the device 306 may be configured to detect or otherwise monitor the amounts of sulfate reducing bacteria in the flow path 304 or the amount of acid producing bacteria in the flow path 304. When the concentration of such microorganisms surpasses a predetermined impurity profile or safe operational limit, the system 300 may alert the operator of the need for a microbiological treatment. Following the microbiological treatment (i.e., any corrective or remedial action), the optical computing device 306 may be useful in determining the effectiveness of the treatment, such as by providing the concentration of viable, non-viable, or inactivated microorganisms remaining within the fluid 302. As will be appreciated, this may have the effect of reducing the damaging effects of certain chemicals on the environment, and pipeline operators will experience reduced chemical procurement costs and chemical remediation costs.

In other embodiments, the fluid 302 may be a fuel, such as diesel or jet fuel, contained in a flow path 304, such as a pipeline or a storage vessel. The optical computing device 306 may be advantageous in monitoring or otherwise quantifying the microbiological amount present within the fluid 302. Some microorganisms, like bacteria and fungi, live in fuels like diesel and jet fuel. Some of these organisms create a slimy biofilm which, in turn, may potentially clog fuel systems. There are some factors that speed up microbiological formation, especially water in the fuel and temperature fluctuations. The time the fuel is stored may also present an important factor for the severity of the issue, as the microorganisms need time to establish a problematic colony. In some cases it can take several months for the colonies to get to a problematic size.

The system 300 may be useful in quantifying the level of bacterial contamination of the fuel in real-time. For instance, the optical computing device 306 may be configured to quantify a specific microbiologic specie and/or strain that typically lives in the fuel to determine if corrective/remedial (i.e., cleaning or dosing) actions are required, or otherwise if the fuel is usable or remains viable. In some embodiments, the system 300 may be installed on a handheld detection apparatus that may be configured to optically interact with the fuel to determine whether or not the fuel is useable. Such a handheld apparatus is described in co-pending U.S. patent application Ser. No. 13/600,288 entitled “Handheld Characteristic Analyzer and Methods of Using the Same,” the contents of which are hereby incorporated by reference to the extent not inconsistent with the present disclosure. In other embodiments, the system 300 may be permanently installed in the flow path 304 (e.g., a pipeline or storage vessel) to provide real-time, constant fuel monitoring capabilities.

In yet other embodiments, the fluid 302 may be water and the system 300 may be advantageous in monitoring or otherwise quantifying the microbiological amount present therein. For instance, water used in subterranean operations in the oil and gas industry can sometimes be obtained from a number of “dirty” water sources, having varying levels of bacterial or other types of microorganism contamination therein. Although microorganism contamination may sometimes not be particularly problematic at ambient temperatures on the Earth's surface, once the water is introduced into a more favorable growth environment, microorganism levels and their detrimental effects may rapidly increase. For example, when introduced into a warm subterranean environment, even low levels of microorganisms can multiply quickly and potentially lead to damage of a subterranean formation. Likewise, favorable growth conditions may sometimes be found in a pipeline or like fluid flow path.

Microorganisms may lead to biofouling of a subterranean surface or pipeline surfaces (internal and external). Anaerobic bacteria may be particularly detrimental when introduced into a subterranean formation or a pipeline due to the hydrogen sulfide that is commonly produced therefrom. Rapidly multiplying microorganisms and their metabolic byproducts can quickly clog and corrode production tubulars, plug formation fractures, and/or produce hydrogen sulfide which represents a health hazard and can lead to completion failure and loss of production. Accordingly, it can be highly desirable to monitor microorganism levels before and/or while conveying water to and from a subterranean formation.

Water treatment equipment, such as Halliburton's CLEANSTREAM® service, can be used to treat the water before it is pumped into one or more flow paths 304 (e.g., pipelines, flowlines, etc.). In operation, the system 300 may be useful in documenting the effectiveness of the water treatment, or otherwise determining the need for additional water treatment. In particular, the optical computing device 306 may be configured to monitor and/or quantify a specific microbiologic specie and/or strain in the water. In some embodiments, the ICE 320 may be configured to detect and quantify viable microorganisms in the fluid 302. In other embodiments, the ICE 320 may be configured to detect and quantify non-viable or inactivated microorganisms in the fluid 302. In yet other embodiments, there may be multiple ICE 320 components configured to detect and quantify viable, non-viable, and/or inactivated microorganisms in the fluid 302. This may prove advantageous in applications such as pipe flushing or water injection operations. In other applications, as will be appreciated, that system 300 may further be useful in determining the quality of drinking water at locations exhibiting sub-premium water sources.

In even further embodiments, the system 300 may be used to determine or otherwise quantify microbiologic content on solid surfaces. As recognized by those skilled in the art, solid surfaces are often susceptible to the growth of microorganisms thereon. One skilled in the art will further recognize that microorganism contamination upon a surface may result in a number of deleterious effects including, for example, biofouling, permeability reduction, structural failure, corrosion, health hazards, and any combination thereof. Contamination by microorganisms can be particularly problematic in a pipeline or like fluid conduit or flow path, as noted above. In a pipeline or like fluid conduit, microorganisms can sometimes aggregate in joints, welds, seams, and the like, where they may significantly increase the risk of structural failure. As discussed above, anaerobic bacteria may be particularly problematic in this regard due to the hydrogen sulfide that they produce as a metabolic byproduct. The system 300 described herein, however, and its multiple variations, may be used to monitor or detect microorganism contamination on such solid surfaces in order to proactively reduce its deleterious effects. For instance, the optical computing device 306 may be configured to monitor and/or quantify a specific microbiologic specie and/or strain that commonly develops on solid surfaces.

Those skilled in the art will readily recognize that microorganisms are typically niched to a habitat, meaning, they are often found in association with certain environmental characteristics including constraints of temperature, chemical, and biological conditions. Such microorganisms will typically form symbiotic relationships with other micro and macro organisms. Additionally, they tend to alter or control their environment such that they experience favorable reproductive conditions. For example, yeast will exude identifiable traces, such as alcohols, which may be indicative of the presence of yeast. Accordingly, when one species or genus, or other related branch of microorganism, is identified, it may often be inferred that there are others of the same species, genus, or other related branch present. Likewise, it may also be inferred that there are similar habitat microorganisms, especially of a symbiotic nature. For instance, the presence of some sulfur-reducing bacteria may be indicative of the presence of either a larger class of sulfur-reducing bacteria, or anaerobic bacteria. Such sulfur-reducing bacteria presence may in fact be inferred by the presence of sulfur products such as H₂S, which they are known to produce. Consequently, the analysis of the presence, destruction, and inactivity of certain microorganisms may be deterministically representative of the presence, destruction, and inactivity other related microorganisms.

Accordingly, in even further embodiments, the system 300 may be used to determine or otherwise quantify a particular microorganism by monitoring or analyzing traces of chemicals or microorganisms associated with the microorganism of interest. In some embodiments, the microorganism of interest may be associated to a monitored/analyzed chemical or microorganism by virtue of habitat, including constraints of temperature, chemical, and biological conditions. In other embodiments, the microorganism of interest may be associated to a monitored/analyzed chemical or microorganism by virtue of symbiosis, where the presence, destruction, and/or inactivity of a monitored microorganisms may be deterministically representative of the presence, destruction, and inactivity of the microorganism of interest.

Referring now to FIG. 4, illustrated is another exemplary system 400 for monitoring a fluid 302, according to one or more embodiments. The system 400 may be similar in some respects to the system 300 of FIG. 3, and therefore may be best understood with reference thereto where like numerals indicate like elements that will not be described again. As illustrated, the optical computing device 306 may again be configured to determine the concentration of a characteristic of interest in the fluid 302 or a microorganism present therein as contained within the flow path 304. Unlike the system 300 of FIG. 3, however, the optical computing device 306 in FIG. 4 may be configured to transmit the electromagnetic radiation through the fluid 302 via a first sampling window 402 a and a second sampling window 402 b arranged radially-opposite the first sampling window 402 a. The first and second sampling windows 402 a,b may be similar to the sampling window 316 described above in FIG. 3.

As the electromagnetic radiation 310 passes through the fluid 302 via the first and second sampling windows 402 a,b, it optically interacts with the fluid 302 and at least one microorganism present therein. Optically interacted radiation 318 is subsequently directed to or otherwise received by the ICE 320 as arranged within the device 306. It is again noted that, while FIG. 4 depicts the ICE 320 as receiving the optically interacted radiation 318 as transmitted through the sampling windows 402 a,b, the ICE 320 may equally be arranged at any point along the optical train of the device 306, without departing from the scope of the disclosure. For example, in one or more embodiments, the ICE 320 may be arranged within the optical train prior to the first sampling window 402 a and equally obtain substantially the same results. In other embodiments, one or each of the first or second sampling windows 402 a,b may serve a dual purpose as both a transmission window and the ICE 320 (i.e., a spectral component). In yet other embodiments, the ICE 320 may generate the modified electromagnetic radiation 322 through reflection, instead of transmission therethrough. Moreover, as with the system 300 of FIG. 3, embodiments are contemplated herein which include the use of at least two ICE components in the device 306 configured to cooperatively determine the characteristic of interest in the fluid 302 or a microorganism present therein.

The modified electromagnetic radiation 322 generated by the ICE 320 is subsequently conveyed to the detector 324 for quantification of the signal and generation of the output signal 326 which corresponds to the particular characteristic of interest in the fluid 302 or a microorganism present therein. As with the system 300 of FIG. 3, the system 400 may also include the second detector 328 for detecting radiating deviations stemming from the electromagnetic radiation source 308. As illustrated, the second detector 328 may be configured to receive a portion of the optically interacted radiation 318 via the beamsplitter 332 in order to detect the radiating deviations. In other embodiments, however, the second detector 328 may be arranged to receive electromagnetic radiation from any portion of the optical train in the device 306 in order to detect the radiating deviations, without departing from the scope of the disclosure. The output signal 326 and the compensating signal 330 may then be conveyed to or otherwise received by the signal processor 334 which may computationally combine the two signals 330, 326 and provide in real-time or near real-time the resulting output signal 336 corresponding to the concentration of the characteristic of interest in the fluid 302 or a microorganism present therein.

Still referring to FIG. 4, with additional reference to FIG. 3, those skilled in the art will readily recognize that, in one or more embodiments, electromagnetic radiation may be derived from the fluid 302 itself, and otherwise derived independent of the electromagnetic radiation source 308. For example, various substances naturally radiate electromagnetic radiation that is able to optically interact with the ICE 320. In some embodiments, for example, the fluid 302 or the microorganism within the fluid 302 may be a blackbody radiating substance configured to radiate heat that may optically interact with the ICE 320. In other embodiments, the fluid 302 or the microorganism within the fluid 302 may be radioactive or chemo-luminescent and, therefore, radiate electromagnetic radiation that is able to optically interact with the ICE 320. In yet other embodiments, the electromagnetic radiation may be induced from the fluid 302 or the microorganism within the fluid 302 by being acted upon mechanically, magnetically, electrically, combinations thereof, or the like. For instance, in at least one embodiment, a voltage may be placed across the fluid 302 or the microorganism within the fluid 302 in order to induce the electromagnetic radiation. As a result, embodiments are contemplated herein where the electromagnetic radiation source 308 is omitted from the optical computing device 306.

It should also be noted that the various drawings provided herein are not necessarily drawn to scale nor are they, strictly speaking, depicted as optically correct as understood by those skilled in optics. Instead, the drawings are merely illustrative in nature and used generally herein in order to supplement understanding of the systems and methods provided herein. Indeed, while the drawings may not be optically accurate, the conceptual interpretations depicted therein accurately reflect the exemplary nature of the various embodiments disclosed.

Therefore, the present invention is well adapted to attain the ends and advantages mentioned as well as those that are inherent therein. The particular embodiments disclosed above are illustrative only, as the present invention may be modified and practiced in different but equivalent manners apparent to those skilled in the art having the benefit of the teachings herein. Furthermore, no limitations are intended to the details of construction or design herein shown, other than as described in the claims below. It is therefore evident that the particular illustrative embodiments disclosed above may be altered, combined, or modified and all such variations are considered within the scope and spirit of the present invention. The invention illustratively disclosed herein suitably may be practiced in the absence of any element that is not specifically disclosed herein and/or any optional element disclosed herein. While compositions and methods are described in terms of “comprising,” “containing,” or “including” various components or steps, the compositions and methods can also “consist essentially of” or “consist of” the various components and steps. All numbers and ranges disclosed above may vary by some amount. Whenever a numerical range with a lower limit and an upper limit is disclosed, any number and any included range falling within the range is specifically disclosed. In particular, every range of values (of the form, “from about a to about b,” or, equivalently, “from approximately a to b,” or, equivalently, “from approximately a-b”) disclosed herein is to be understood to set forth every number and range encompassed within the broader range of values. Also, the terms in the claims have their plain, ordinary meaning unless otherwise explicitly and clearly defined by the patentee. Moreover, the indefinite articles “a” or “an,” as used in the claims, are defined herein to mean one or more than one of the element that it introduces. If there is any conflict in the usages of a word or term in this specification and one or more patent or other documents that may be incorporated herein by reference, the definitions that are consistent with this specification should be adopted. 

The invention claimed is:
 1. A system, comprising: a flow path containing a fluid; at least one integrated computational element configured to optically interact with the fluid and at least one microorganism therein, thereby generating optically interacted light; and at least one detector arranged to receive the optically interacted light and generate an output signal corresponding to a characteristic of the fluid, the characteristic of the fluid comprising a property relating to the at least one microorganism, wherein the integrated computational element comprises a plurality of alternating layers of two materials having different indices of refraction, one of the two materials is selected from the group consisting of silicon, silica, quartz, niobium, niobia, germanium, germania, magnesium fluoride (MgF), and silicon oxide (SiO), and wherein a portion of the optically interacted light is transmitted through the at least one integrated computational element.
 2. The system of claim 1, wherein the property relating to the at least one microorganism is a concentration of the at least one microorganism within the fluid.
 3. The system of claim 1, wherein the at least one integrated computational element is configured to analyze the fluid for viable microorganisms within the fluid.
 4. The system of claim 1, wherein the at least one integrated computational element is configured to analyze the fluid for non-viable microorganisms within the fluid.
 5. The system of claim 1, wherein the fluid comprises a fluid selected from the group consisting of a hydrocarbon, jet fuel, diesel fuel, water, combinations thereof, and any derivative thereof.
 6. The system of claim 1, wherein the flow path comprises a flow path selected from the group consisting of a flowline, a pipeline, a hose, a process facility, a storage vessel, a tanker, a railway tank car, a transport ship or vessel, a trough, a stream, a sewer, a subterranean formation, and combinations thereof.
 7. The system of claim 1, wherein the at least one microorganism comprises a microorganism selected from the group consisting of bacteria, protobacteria, protozoa, phytoplankton, viruses, fungi, algae, microbiological substances, combinations thereof, and any derivative thereof.
 8. The system of claim 7, wherein the bacteria is a sulfate reducing bacteria.
 9. The system of claim 7, wherein the bacteria is aerobic or anaerobic.
 10. The system of claim 1, further comprising an electromagnetic radiation source configured to emit electromagnetic radiation that optically interacts with the fluid.
 11. The system of claim 10, wherein the at least one detector is a first detector and the system further comprises a second detector arranged to detect electromagnetic radiation from the electromagnetic radiation source and thereby generate a compensating signal indicative of electromagnetic radiating deviations.
 12. The system of claim 11, further comprising a signal processor communicably coupled to the first and second detectors, the signal processor being configured to receive and computationally combine the output and compensating signals in order to normalize the output signal.
 13. The system of claim 1, wherein the concentration of the at least one microorganism within the fluid is a trace of the at least one microorganism associated with a microorganism of interest.
 14. A method of monitoring a fluid, comprising: containing the fluid within a flow path; optically interacting at least one integrated computational element with the fluid and at least one microorganism present within the fluid, thereby generating optically interacted light; receiving with at least one detector the optically interacted light; and generating with the at least one detector an output signal corresponding to a characteristic of the fluid, the characteristic of the fluid being a property relating to the at least one microorganism within the fluid, wherein the integrated computational element comprises a plurality of alternating layers of two materials having different indices of refraction, one of the two materials is selected from the group consisting of silicon, silica, quartz, niobium, niobia, germanium, germania, magnesium fluoride (MgF), and silicon oxide (SiO), and wherein a portion of the optically interacted light is transmitted through the at least one integrated computational element.
 15. The method of claim 14, further comprising analyzing the fluid for viable microorganisms within the fluid with the at least one integrated computational element.
 16. The method of claim 14, further comprising analyzing the fluid for non-viable microorganisms within the fluid with the at least one integrated computational element.
 17. The method of claim 14, wherein the property relating to the at least one microorganism is a concentration of the at least one microorganism within the fluid.
 18. The method of claim 17, wherein the concentration of the at least one microorganism within the fluid is a trace of the at least one microorganism associated with a microorganism of interest.
 19. The method of claim 14, further comprising: receiving the output signal with a signal processor communicably coupled to the at least one detector; and determining the characteristic of the fluid with the signal processor.
 20. A quality control method for a fluid, comprising: optically interacting at least one integrated computational element with a fluid contained within a flow path and thereby generating optically interacted light, the fluid having at least one microorganism present therein; receiving with at least one detector the optically interacted light; measuring a characteristic of the fluid with the at least one detector, the characteristic of the fluid being a property relating to the at least one microorganism; generating an output signal corresponding to the characteristic of the fluid; and undertaking at least one corrective step when the characteristic of the fluid surpasses a predetermined range of suitable operation, wherein the integrated computational element comprises a plurality of alternating layers of two materials having different indices of refraction, one of the two materials is selected from the group consisting of silicon, silica, quartz, niobium, niobia, germanium, germania, magnesium fluoride (MgF), and silicon oxide (SiO), and wherein a portion of the optically interacted light is transmitted through the at least one integrated computational element.
 21. The method of claim 20, wherein the property relating to the at least one microorganism is a concentration of the at least one microorganism within the fluid.
 22. The method of claim 20, further comprising analyzing the fluid for viable microorganisms within the fluid with the at least one integrated computational element.
 23. The method of claim 22, wherein undertaking the at least one corrective step comprises adding an anti-bacterial or microbiological treatment to the flow path to reduce the concentration of viable microorganisms.
 24. The method of claim 20, further comprising analyzing the fluid for non-viable microorganisms within the fluid with the at least one integrated computational element.
 25. The method of claim 20, wherein generating an output signal corresponding to the characteristic of the fluid further comprises determining the effectiveness of an anti-bacterial or microbiological treatment.
 26. The method of claim 20, wherein generating an output signal corresponding to the characteristic of the fluid further comprises determining the need for an anti-bacterial or microbiological treatment. 